STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
icaBIntercellular adhesion protein icaB; Similar to polysaccharide deacetylase; High confidence in function and specificity. (274 aa)    
Predicted Functional Partners:
glpT
Glycerol-3-phosphate transporter; Major Facilitator Superfamily; High confidence in function and specificity.
      
 0.728
icaA
Similar to intercellular adhesion protein A; Glycosyl transferase, family 2; Function unclear.
 
   
 0.661
lmrP
Multidrug resistance protein; PF07690: Major facilitator superfamily I, TIGR00880: Multidrug resistance protein; High confidence in function and specificity.
   
  
 0.572
llmg_0648
Conserved hypothetical protein; Putative transposase helper protein for IS981; Family membership.
       0.565
tnp981-3
Transposase for insertion sequence element IS981C; Integrase, catalytic region; High confidence in function and specificity.
       0.558
llmg_1853
ABC transporter ATP-binding and permease protein; Protein of unknown function DUF214; Family membership.
  
 
 0.534
llmg_0624
Pseudogene; Possible duplication of enoA (fragment) by insertion of upstream DNA fragment; High confidence in function and specificity.
  
 
 0.408
llmg_1468
Putative ABC transporter ATP binding protein; Specificity unclear.
  
 
 0.408
llmg_1675
ABC transporter ATP-binding protein; Specificity unclear.
  
 
 0.408
llmg_1932
Pseudogene; ABC-type antimicrobial transport system, Contains a frameshift around position 312, Similar to bacitracin export permease protein BceB; Conserved hypothetical protein.
  
 
 0.408
Your Current Organism:
Lactococcus lactis
NCBI taxonomy Id: 416870
Other names: L. lactis subsp. cremoris MG1363, Lactococcus lactis subsp. cremoris MG1363, Lactococcus lactis subsp. cremoris str. MG1363, Lactococcus lactis subsp. cremoris strain MG1363
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.