STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
llmg_0733lytR_cpsA_psr: cell envelope-related function transcriptional attenuator common domain; High confidence in function and specificity. (463 aa)    
Predicted Functional Partners:
llmg_0220
Glycosyl transferase, family 2; Conserved hypothetical protein.
      
 0.835
llmg_0226
Possible surface protein.
      
 0.791
tnp1077-6
Pseudogene; Transposase for insertion sequence IS1077G (fragment), Integrase, catalytic region; Conserved hypothetical protein.
 
  
 0.788
codY
Transcriptional regulator; DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor; Belongs to the CodY family.
  
   
 0.687
rgpD
Polysaccharide ABC transporter ATP-binding protein RgpD; High confidence in function and specificity.
      
 0.558
cmk
Cytidine monophosphate kinase; High confidence in function and specificity.
       0.554
rgpF
alpha-L-Rha alpha-1,2-L-rhamnosyltransferase RgpF; Rhamnan synthesis protein F, polysaccharide biosynthesis protein; High confidence in function and specificity.
      
 0.550
codZ
Transcriptional repressor, CodY family; High confidence in function and specificity.
  
   
 0.501
rgpC
Capsule polysaccharide export inner-membrane protein RgpC; ABC-2 type transporter; Conserved hypothetical protein.
 
   
 0.498
llmg_0731
Putative secreted protein; Contains one Peptidoglycan-binding LysM domain.
 
    0.476
Your Current Organism:
Lactococcus lactis
NCBI taxonomy Id: 416870
Other names: L. lactis subsp. cremoris MG1363, Lactococcus lactis subsp. cremoris MG1363, Lactococcus lactis subsp. cremoris str. MG1363, Lactococcus lactis subsp. cremoris strain MG1363
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