Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ps313PF04761: Lactococcus bacteriophage putative transcription regulator. (58 aa)    
Predicted Functional Partners:
ps312
Hypothetical protein predicted by Glimmer/Critica.
       0.773
ps311
Hypothetical protein predicted by Glimmer/Critica.
       0.543
ps314
Conserved hypothetical protein; PF07211: Protein of unknown function DUF1417.
       0.519
ps315
Hypothetical protein predicted by Glimmer/Critica; TIGR01618: phage nucleotide-binding protein; Conserved hypothetical protein.
       0.516
ps316
Hypothetical protein predicted by Glimmer/Critica; Putative ssDNA binding protein.
       0.516
Your Current Organism:
Lactococcus lactis
NCBI taxonomy Id: 416870
Other names: L. lactis subsp. cremoris MG1363, Lactococcus lactis subsp. cremoris MG1363, Lactococcus lactis subsp. cremoris str. MG1363, Lactococcus lactis subsp. cremoris strain MG1363
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