STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tnp905-3Pseudogene; Transposase for insertion sequence element IS905D, contains a stop codon at position 606; High confidence in function and specificity. (176 aa)    
Predicted Functional Partners:
llmg_0992
Putative nucleoside-diphosphate-sugar epimerases; Family membership.
 
     0.886
llmg_2465
Conserved hypothetical protein; PF06458: MucBP domain.
  
    0.622
llmg_0137
Permeases of the major facilitator superfamily, von Willebrand factor, type A.
  
     0.611
llmg_0246
Conserved hypothetical protein; Predicted nucleoside-diphosphate-sugar epimerases.
  
     0.604
llmg_1667
Glycosyltransferase; Glycosyl transferase, family 2, Glycosyltransferases, probably involved in cell wall biogenesis; Specificity unclear.
  
   
 0.587
padC
PadC protein; Probable phenolic acid decarboxylase; High confidence in function and specificity.
  
     0.539
ps337
Hypothetical protein predicted by Glimmer/Critica; TIGR01641 : phage putative head morphogenesis protein, SPP1 gp7 family.
  
     0.536
ps352
Conserved hypothetical protein.
  
     0.526
ps115
Phage repressor; Family membership.
  
     0.516
pnuC2
Nicotinamide mononucleotide transporter; High confidence in function and specificity.
  
     0.513
Your Current Organism:
Lactococcus lactis
NCBI taxonomy Id: 416870
Other names: L. lactis subsp. cremoris MG1363, Lactococcus lactis subsp. cremoris MG1363, Lactococcus lactis subsp. cremoris str. MG1363, Lactococcus lactis subsp. cremoris strain MG1363
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.