Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| aroC | llmg_2481 | llmg_1934 | llmg_2481 | AroC protein; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | PF01817: Chorismate mutase type II, TIGR01805: CM_mono_grmpos: chorismate mutase; Family membership. | 0.975 |
| aroC | pabA | llmg_1934 | llmg_1153 | AroC protein; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | P-aminobenzoate synthetase, component II; PF00117: Glutamine amidotransferase class-I, TIGR00566: glutamine amidotransferase of anthranilate synthase or para-aminobenzoate synthase; High confidence in function and specificity. | 0.864 |
| aroC | pabB | llmg_1934 | llmg_1154 | AroC protein; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | PF00425: chorismate binding enzyme, TIGR00553: para-aminobenzoate synthase, component I; High confidence in function and specificity. | 0.915 |
| aroC | trpA | llmg_1934 | llmg_1042 | AroC protein; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | TrpA protein; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family. | 0.678 |
| aroC | trpB | llmg_1934 | llmg_1041 | AroC protein; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | TrpB protein; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine. | 0.601 |
| aroC | trpC | llmg_1934 | llmg_1038 | AroC protein; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | TrpC protein; High confidence in function and specificity; Belongs to the TrpC family. | 0.433 |
| aroC | trpD | llmg_1934 | llmg_1032 | AroC protein; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | TrpD protein; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA). | 0.577 |
| aroC | trpE | llmg_1934 | llmg_1030 | AroC protein; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | Anthranilate synthase component I; Part of a heterotetrameric complex that catalyzes the two- step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine-binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentr [...] | 0.946 |
| aroC | trpG | llmg_1934 | llmg_1031 | AroC protein; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | Anthranilate synthase component II; High confidence in function and specificity. | 0.932 |
| llmg_2481 | aroC | llmg_2481 | llmg_1934 | PF01817: Chorismate mutase type II, TIGR01805: CM_mono_grmpos: chorismate mutase; Family membership. | AroC protein; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.975 |
| llmg_2481 | pabA | llmg_2481 | llmg_1153 | PF01817: Chorismate mutase type II, TIGR01805: CM_mono_grmpos: chorismate mutase; Family membership. | P-aminobenzoate synthetase, component II; PF00117: Glutamine amidotransferase class-I, TIGR00566: glutamine amidotransferase of anthranilate synthase or para-aminobenzoate synthase; High confidence in function and specificity. | 0.836 |
| llmg_2481 | pabB | llmg_2481 | llmg_1154 | PF01817: Chorismate mutase type II, TIGR01805: CM_mono_grmpos: chorismate mutase; Family membership. | PF00425: chorismate binding enzyme, TIGR00553: para-aminobenzoate synthase, component I; High confidence in function and specificity. | 0.829 |
| llmg_2481 | trpE | llmg_2481 | llmg_1030 | PF01817: Chorismate mutase type II, TIGR01805: CM_mono_grmpos: chorismate mutase; Family membership. | Anthranilate synthase component I; Part of a heterotetrameric complex that catalyzes the two- step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine-binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentr [...] | 0.914 |
| llmg_2481 | trpG | llmg_2481 | llmg_1031 | PF01817: Chorismate mutase type II, TIGR01805: CM_mono_grmpos: chorismate mutase; Family membership. | Anthranilate synthase component II; High confidence in function and specificity. | 0.918 |
| pabA | aroC | llmg_1153 | llmg_1934 | P-aminobenzoate synthetase, component II; PF00117: Glutamine amidotransferase class-I, TIGR00566: glutamine amidotransferase of anthranilate synthase or para-aminobenzoate synthase; High confidence in function and specificity. | AroC protein; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.864 |
| pabA | llmg_2481 | llmg_1153 | llmg_2481 | P-aminobenzoate synthetase, component II; PF00117: Glutamine amidotransferase class-I, TIGR00566: glutamine amidotransferase of anthranilate synthase or para-aminobenzoate synthase; High confidence in function and specificity. | PF01817: Chorismate mutase type II, TIGR01805: CM_mono_grmpos: chorismate mutase; Family membership. | 0.836 |
| pabA | pabB | llmg_1153 | llmg_1154 | P-aminobenzoate synthetase, component II; PF00117: Glutamine amidotransferase class-I, TIGR00566: glutamine amidotransferase of anthranilate synthase or para-aminobenzoate synthase; High confidence in function and specificity. | PF00425: chorismate binding enzyme, TIGR00553: para-aminobenzoate synthase, component I; High confidence in function and specificity. | 0.999 |
| pabA | trpA | llmg_1153 | llmg_1042 | P-aminobenzoate synthetase, component II; PF00117: Glutamine amidotransferase class-I, TIGR00566: glutamine amidotransferase of anthranilate synthase or para-aminobenzoate synthase; High confidence in function and specificity. | TrpA protein; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family. | 0.917 |
| pabA | trpB | llmg_1153 | llmg_1041 | P-aminobenzoate synthetase, component II; PF00117: Glutamine amidotransferase class-I, TIGR00566: glutamine amidotransferase of anthranilate synthase or para-aminobenzoate synthase; High confidence in function and specificity. | TrpB protein; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine. | 0.853 |
| pabA | trpC | llmg_1153 | llmg_1038 | P-aminobenzoate synthetase, component II; PF00117: Glutamine amidotransferase class-I, TIGR00566: glutamine amidotransferase of anthranilate synthase or para-aminobenzoate synthase; High confidence in function and specificity. | TrpC protein; High confidence in function and specificity; Belongs to the TrpC family. | 0.994 |
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