STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
llmg_1069Conserved hypothetical protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein. (111 aa)    
Predicted Functional Partners:
ffh
Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily.
  
  
 0.973
llmg_1079
Conserved hypothetical protein; Protein of unknown function DUF1093.
      
 0.925
llmg_0856
Conserved hypothetical protein; Putative multidrug transporter, PF07690: Major Facilitator Superfamily.
      
 0.923
llmg_1968
Uncharacterized protein conserved in bacteria; Belongs to the WXG100 family.
      
 0.923
sunL
Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
  
  
 0.872
comGB
Putative competence protein ComGB; PF00482: Bacterial type II secretion system protein F domain, putative membrane protein; Conserved hypothetical protein.
      
 0.801
rbsB
Ribose ABC transporter substrate binding protein RbsB; High confidence in function and specificity.
      
 0.795
radC
DNA repair protein radC homolog; High confidence in function and specificity; Belongs to the UPF0758 family.
     
 0.782
comGC
Putative competence protein ComGC; Specificity unclear.
      
 0.775
llmg_1500
Similar to SAM-dependent methyltransferases; Conserved hypothetical protein.
  
     0.754
Your Current Organism:
Lactococcus lactis
NCBI taxonomy Id: 416870
Other names: L. lactis subsp. cremoris MG1363, Lactococcus lactis subsp. cremoris MG1363, Lactococcus lactis subsp. cremoris str. MG1363, Lactococcus lactis subsp. cremoris strain MG1363
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