STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
llmg_1234Conserved hypothetical protein; Putative transposase helper protein for IS981. (86 aa)    
Predicted Functional Partners:
tnp981-9
Transposase for insertion element IS981J; PF00665: Integrase core domain; High confidence in function and specificity.
  
    0.772
llmg_1550
Conserved hypothetical protein; Protein of unknown function DUF402; Belongs to the UPF0374 family.
      
 0.552
llmg_0996
Pseudogene; Predicted MDR-type permease, Major facilitator superfamily, missing N-terminal end (frameshift); Conserved hypothetical protein.
      
 0.551
llmg_0995
Hydrolase, haloacid dehalogenase-like family protein; HAD-superfamily subfamily IA hydrolase; Family membership.
      
 0.550
llmg_0998
TIGR01484: HAD-superfamily hydrolase, subfamily IIB; Family membership.
      
 0.550
llmg_1857
Putative esterase.
      
 0.550
llmg_2249
Hypothetical protein.
      
 0.550
llmg_2516
Hypothetical protein predicted by Glimmer/Critica; TIGR00241: CoA-substrate-specific enzyme activase, putative, PF01869: BadF/BadG/BcrA/BcrD ATPase family; Family membership.
      
 0.550
llmg_2517
Conserved hypothetical protein; Region start changed from 2474583 to 2474592 (-9 bases).
      
 0.550
pbuO
Xanthine/uracil/vitamin C permease; Conserved hypothetical protein.
      
 0.465
Your Current Organism:
Lactococcus lactis
NCBI taxonomy Id: 416870
Other names: L. lactis subsp. cremoris MG1363, Lactococcus lactis subsp. cremoris MG1363, Lactococcus lactis subsp. cremoris str. MG1363, Lactococcus lactis subsp. cremoris strain MG1363
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.