STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
llmg_1320Putative xylan beta-1,4-xylosidase; Pseudogene; Conserved hypothetical protein; Belongs to the glycosyl hydrolase 43 family. (461 aa)    
Predicted Functional Partners:
llmg_1321
Conserved hypothetical protein; Putative Endoglucanase; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
   
 0.836
uxaC
UxaC protein; High confidence in function and specificity.
    
 0.813
xylA
XylA protein; High confidence in function and specificity.
 
  
 0.791
llmg_1014
Conserved hypothetical protein; Contains Proteinase inhibitor I11 ecotin domain (SSF49772).
   
 0.658
aguA
AguA protein; PF07488: Glycosyl hydrolase family 67 middle domain, PF07477: Glycosyl hydrolase family 67 C-terminus; High confidence in function and specificity.
 
   
 0.600
llmg_1166
Putative endoglucanase; Pseudogene, IPR008928: Glycoside transferase, six-hairpin; High confidence in function and specificity.
 
  
 0.437
llmg_1608
Putative glycosyl hydrolases; Similar to xylosidases/arabinosidases; Function unclear; Belongs to the glycosyl hydrolase 43 family.
  
     0.417
llmg_1161
Sialic acid-specific 9-O-acetylesterase; Pseudogene; Conserved hypothetical protein.
 
   
 0.404
Your Current Organism:
Lactococcus lactis
NCBI taxonomy Id: 416870
Other names: L. lactis subsp. cremoris MG1363, Lactococcus lactis subsp. cremoris MG1363, Lactococcus lactis subsp. cremoris str. MG1363, Lactococcus lactis subsp. cremoris strain MG1363
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