Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| def | llmg_1639 | llmg_0532 | llmg_1639 | Putative membrane protein; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | ABC transporter ATP-binding protein; Similar to putative lincosamides and streptogramins A transporter Lsa; Specificity unclear. | 0.763 |
| def | llmg_1640 | llmg_0532 | llmg_1640 | Putative membrane protein; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Hypothetical protein predicted by Glimmer/Critica. | 0.752 |
| def | rplC | llmg_0532 | llmg_2383 | Putative membrane protein; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.754 |
| def | rplD | llmg_0532 | llmg_2382 | Putative membrane protein; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 50S ribosomal protein L4 (BL4); One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | 0.775 |
| def | rplM | llmg_0532 | llmg_2546 | Putative membrane protein; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.770 |
| def | rplU | llmg_0532 | llmg_1493 | Putative membrane protein; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.820 |
| def | rpsC | llmg_0532 | llmg_2377 | Putative membrane protein; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.753 |
| def | rpsD | llmg_0532 | llmg_0296 | Putative membrane protein; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.804 |
| def | rpsG | llmg_0532 | llmg_2557 | Putative membrane protein; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.760 |
| def | rpsO | llmg_0532 | llmg_2078 | Putative membrane protein; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.775 |
| llmg_1639 | def | llmg_1639 | llmg_0532 | ABC transporter ATP-binding protein; Similar to putative lincosamides and streptogramins A transporter Lsa; Specificity unclear. | Putative membrane protein; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 0.763 |
| llmg_1639 | llmg_1640 | llmg_1639 | llmg_1640 | ABC transporter ATP-binding protein; Similar to putative lincosamides and streptogramins A transporter Lsa; Specificity unclear. | Hypothetical protein predicted by Glimmer/Critica. | 0.951 |
| llmg_1639 | rplC | llmg_1639 | llmg_2383 | ABC transporter ATP-binding protein; Similar to putative lincosamides and streptogramins A transporter Lsa; Specificity unclear. | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.552 |
| llmg_1639 | rplD | llmg_1639 | llmg_2382 | ABC transporter ATP-binding protein; Similar to putative lincosamides and streptogramins A transporter Lsa; Specificity unclear. | 50S ribosomal protein L4 (BL4); One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | 0.574 |
| llmg_1639 | rplM | llmg_1639 | llmg_2546 | ABC transporter ATP-binding protein; Similar to putative lincosamides and streptogramins A transporter Lsa; Specificity unclear. | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.564 |
| llmg_1639 | rplU | llmg_1639 | llmg_1493 | ABC transporter ATP-binding protein; Similar to putative lincosamides and streptogramins A transporter Lsa; Specificity unclear. | 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.564 |
| llmg_1639 | rpsC | llmg_1639 | llmg_2377 | ABC transporter ATP-binding protein; Similar to putative lincosamides and streptogramins A transporter Lsa; Specificity unclear. | 30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.561 |
| llmg_1639 | rpsD | llmg_1639 | llmg_0296 | ABC transporter ATP-binding protein; Similar to putative lincosamides and streptogramins A transporter Lsa; Specificity unclear. | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.548 |
| llmg_1639 | rpsG | llmg_1639 | llmg_2557 | ABC transporter ATP-binding protein; Similar to putative lincosamides and streptogramins A transporter Lsa; Specificity unclear. | 30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.553 |
| llmg_1639 | rpsO | llmg_1639 | llmg_2078 | ABC transporter ATP-binding protein; Similar to putative lincosamides and streptogramins A transporter Lsa; Specificity unclear. | 30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.561 |
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