STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
llmg_1640Hypothetical protein predicted by Glimmer/Critica. (53 aa)    
Predicted Functional Partners:
llmg_1639
ABC transporter ATP-binding protein; Similar to putative lincosamides and streptogramins A transporter Lsa; Specificity unclear.
     
 0.951
def
Putative membrane protein; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
      
 0.752
ps119
Conserved hypothetical protein; Similar to ps113 of IL1403, Protein of unknown function (DUF1655), Phage associated.
      
 0.465
ps118
Hypothetical protein, phage associated; Lambda repressor-like, DNA-binding, Helix-turn-helix.
      
 0.465
llmg_0305
Hypothetical protein predicted by Glimmer/Critica.
      
 0.465
llmg_1960
Hypothetical protein predicted by Glimmer/Critica; Cation transporter; Conserved hypothetical protein.
      
 0.465
llmg_2022
Hypothetical protein predicted by Glimmer/Critica.
      
 0.465
llmg_2202
Hypothetical protein predicted by Glimmer/Critica.
      
 0.465
ps115
Phage repressor; Family membership.
      
 0.463
ps108
Ps108 protein; Similar to ps120 from IL1403.
      
 0.463
Your Current Organism:
Lactococcus lactis
NCBI taxonomy Id: 416870
Other names: L. lactis subsp. cremoris MG1363, Lactococcus lactis subsp. cremoris MG1363, Lactococcus lactis subsp. cremoris str. MG1363, Lactococcus lactis subsp. cremoris strain MG1363
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