STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
llmg_1650Putative secreted protein; Region start changed from 1627838 to 1627784 (-54 bases). (191 aa)    
Predicted Functional Partners:
llmg_1115
XpaC-like protein; Similar to Bacillus subtilis xpaC gene, involved in cell morphology; Specificity unclear.
  
   
 0.974
llmg_2164
Hypothetical protein.
 
  
 0.960
kinD
Sensor protein kinase kinD; Histidine kinase; High confidence in function and specificity.
 
  
 0.955
llmg_1644
Putative membrane protein.
 
   
 0.934
telA1
Toxic anion resistance protein; High confidence in function and specificity; Belongs to the TelA family.
  
   
 0.895
llrD
Two-component system regulator llrD; Response regulator receiver domain; High confidence in function and specificity.
 
  
 0.874
llmg_1645
General stress protein GSP13; Putative polyribonucleotide nucleotidyltransferase, 30S ribosomal protein S1; Function unclear.
     
 0.857
llmg_0169
Hypothetical protein predicted by Glimmer/Critica; Transmembrane protein.
      
 0.759
llmg_0165
Conserved hypothetical protein; Predicted integral membrane protein.
      
 0.758
tgt
Queuine tRNA-ribosyltransferase; Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form th [...]
      
 0.751
Your Current Organism:
Lactococcus lactis
NCBI taxonomy Id: 416870
Other names: L. lactis subsp. cremoris MG1363, Lactococcus lactis subsp. cremoris MG1363, Lactococcus lactis subsp. cremoris str. MG1363, Lactococcus lactis subsp. cremoris strain MG1363
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