Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| alaS | coiA | llmg_1906 | llmg_1911 | AlaS protein; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | Pseudogene; Competence protein CoiA-like family, contains stopcodon at position 225. | 0.937 |
| alaS | pmpA | llmg_1906 | llmg_1907 | AlaS protein; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | Foldase protein prsA precursor; Plays a major role in protein secretion by helping the post- translocational extracellular folding of several secreted proteins. | 0.876 |
| coiA | alaS | llmg_1911 | llmg_1906 | Pseudogene; Competence protein CoiA-like family, contains stopcodon at position 225. | AlaS protein; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.937 |
| coiA | llmg_1503 | llmg_1911 | llmg_1503 | Pseudogene; Competence protein CoiA-like family, contains stopcodon at position 225. | TIGR02167: Bacterial surface protein 26-residue repeat; Family membership. | 0.556 |
| coiA | llmg_1912 | llmg_1911 | llmg_1912 | Pseudogene; Competence protein CoiA-like family, contains stopcodon at position 225. | COG:4814 Uncharacterized protein with an alpha/beta hydrolase fold, Bacterial protein of unknown function DUF915. | 0.475 |
| coiA | llmg_1930 | llmg_1911 | llmg_1930 | Pseudogene; Competence protein CoiA-like family, contains stopcodon at position 225. | Membrane protein, putative; VanZ like family. | 0.702 |
| coiA | oppA | llmg_1911 | llmg_0701 | Pseudogene; Competence protein CoiA-like family, contains stopcodon at position 225. | Oligopeptide-binding protein oppA precursor; Bacterial extracellular solute-binding protein, family 5; High confidence in function and specificity. | 0.520 |
| coiA | pepF | llmg_1911 | llmg_1909 | Pseudogene; Competence protein CoiA-like family, contains stopcodon at position 225. | PepF protein; Peptidase M3B, oligoendopeptidase F; High confidence in function and specificity. | 0.751 |
| coiA | pmpA | llmg_1911 | llmg_1907 | Pseudogene; Competence protein CoiA-like family, contains stopcodon at position 225. | Foldase protein prsA precursor; Plays a major role in protein secretion by helping the post- translocational extracellular folding of several secreted proteins. | 0.546 |
| llmg_1503 | coiA | llmg_1503 | llmg_1911 | TIGR02167: Bacterial surface protein 26-residue repeat; Family membership. | Pseudogene; Competence protein CoiA-like family, contains stopcodon at position 225. | 0.556 |
| llmg_1503 | pmpA | llmg_1503 | llmg_1907 | TIGR02167: Bacterial surface protein 26-residue repeat; Family membership. | Foldase protein prsA precursor; Plays a major role in protein secretion by helping the post- translocational extracellular folding of several secreted proteins. | 0.756 |
| llmg_1912 | coiA | llmg_1912 | llmg_1911 | COG:4814 Uncharacterized protein with an alpha/beta hydrolase fold, Bacterial protein of unknown function DUF915. | Pseudogene; Competence protein CoiA-like family, contains stopcodon at position 225. | 0.475 |
| llmg_1912 | pmpA | llmg_1912 | llmg_1907 | COG:4814 Uncharacterized protein with an alpha/beta hydrolase fold, Bacterial protein of unknown function DUF915. | Foldase protein prsA precursor; Plays a major role in protein secretion by helping the post- translocational extracellular folding of several secreted proteins. | 0.490 |
| llmg_1930 | coiA | llmg_1930 | llmg_1911 | Membrane protein, putative; VanZ like family. | Pseudogene; Competence protein CoiA-like family, contains stopcodon at position 225. | 0.702 |
| oppA | coiA | llmg_0701 | llmg_1911 | Oligopeptide-binding protein oppA precursor; Bacterial extracellular solute-binding protein, family 5; High confidence in function and specificity. | Pseudogene; Competence protein CoiA-like family, contains stopcodon at position 225. | 0.520 |
| pepF | coiA | llmg_1909 | llmg_1911 | PepF protein; Peptidase M3B, oligoendopeptidase F; High confidence in function and specificity. | Pseudogene; Competence protein CoiA-like family, contains stopcodon at position 225. | 0.751 |
| pepF | pmpA | llmg_1909 | llmg_1907 | PepF protein; Peptidase M3B, oligoendopeptidase F; High confidence in function and specificity. | Foldase protein prsA precursor; Plays a major role in protein secretion by helping the post- translocational extracellular folding of several secreted proteins. | 0.544 |
| pmpA | alaS | llmg_1907 | llmg_1906 | Foldase protein prsA precursor; Plays a major role in protein secretion by helping the post- translocational extracellular folding of several secreted proteins. | AlaS protein; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.876 |
| pmpA | coiA | llmg_1907 | llmg_1911 | Foldase protein prsA precursor; Plays a major role in protein secretion by helping the post- translocational extracellular folding of several secreted proteins. | Pseudogene; Competence protein CoiA-like family, contains stopcodon at position 225. | 0.546 |
| pmpA | llmg_1503 | llmg_1907 | llmg_1503 | Foldase protein prsA precursor; Plays a major role in protein secretion by helping the post- translocational extracellular folding of several secreted proteins. | TIGR02167: Bacterial surface protein 26-residue repeat; Family membership. | 0.756 |
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