STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sufBConserved hypothetical protein; Putative FeS assembly protein SufB. (470 aa)    
Predicted Functional Partners:
llmg_1974
Putative ATP-dependent transporter; Conserved hypothetical protein.
 
 0.997
llmg_1972
Conserved hypothetical protein; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 
 0.995
nifU
Conserved hypothetical protein; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
 
  
 0.953
llmg_1968
Uncharacterized protein conserved in bacteria; Belongs to the WXG100 family.
     
 0.872
llmg_1973
Conserved hypothetical protein; Putative FeS assembly protein SufD.
 
  
0.864
sunL
Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
  
  
 0.639
llmg_0856
Conserved hypothetical protein; Putative multidrug transporter, PF07690: Major Facilitator Superfamily.
      
 0.632
llmg_1069
Conserved hypothetical protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein.
      
 0.632
llmg_1079
Conserved hypothetical protein; Protein of unknown function DUF1093.
      
 0.632
llmg_1658
Conserved hypothetical protein; Putative metal-sulfur cluster biosynthetic enzyme.
 
   
 0.533
Your Current Organism:
Lactococcus lactis
NCBI taxonomy Id: 416870
Other names: L. lactis subsp. cremoris MG1363, Lactococcus lactis subsp. cremoris MG1363, Lactococcus lactis subsp. cremoris str. MG1363, Lactococcus lactis subsp. cremoris strain MG1363
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.