STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tnp1077-6Pseudogene; Transposase for insertion sequence IS1077G (fragment), Integrase, catalytic region; Conserved hypothetical protein. (441 aa)    
Predicted Functional Partners:
rgpF
alpha-L-Rha alpha-1,2-L-rhamnosyltransferase RgpF; Rhamnan synthesis protein F, polysaccharide biosynthesis protein; High confidence in function and specificity.
     
 0.907
rgpB
Rhamnosyltransferase RgpB; Glycosyl transferase, family 2, putative polysaccharide synthesis protein; High confidence in function and specificity.
  
  
 0.888
rgpA
Rhamnosyltransferase RgpA; Putative polysaccharide biosynthesis protein; High confidence in function and specificity.
  
  
 0.879
rgpC
Capsule polysaccharide export inner-membrane protein RgpC; ABC-2 type transporter; Conserved hypothetical protein.
 
  
 0.870
llmg_1977
Putative MecA homolog; Enables the recognition and targeting of unfolded and aggregated proteins to the ClpC protease or to other proteins involved in proteolysis; Belongs to the MecA family.
     
 0.805
llmg_0733
lytR_cpsA_psr: cell envelope-related function transcriptional attenuator common domain; High confidence in function and specificity.
 
  
 0.788
llmg_0220
Glycosyl transferase, family 2; Conserved hypothetical protein.
  
  
 0.734
rmlA
Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
     
 0.709
murD
MurD protein; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family.
 
  
 0.699
murF
UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.
 
 
 0.696
Your Current Organism:
Lactococcus lactis
NCBI taxonomy Id: 416870
Other names: L. lactis subsp. cremoris MG1363, Lactococcus lactis subsp. cremoris MG1363, Lactococcus lactis subsp. cremoris str. MG1363, Lactococcus lactis subsp. cremoris strain MG1363
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.