Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
llmg_2002Conserved hypothetical protein; Protein of unknown function. (154 aa)    
Predicted Functional Partners:
llmg_2003
UDP-glucose 4-epimerase; High confidence in function and specificity.
 
   
 0.946
nifZ
Pyridoxal-phosphate dependent aminotransferase; Aminotransferase class-V; High confidence in function and specificity.
  
  
 0.556
nifS
Putative iron-sulfur cofactor synthesis protein; Cysteine desulfurase/Cysteine sulfinate desulfinase; High confidence in function and specificity.
  
  
 0.556
nifU
Conserved hypothetical protein; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
  
  
 0.509
llmg_2004
Hypothetical protein; Probable acetyltransferase (GNAT) family.
       0.460
llmg_2000
Putative permease; Protein of unknown function DUF20; Conserved hypothetical protein.
       0.425
Your Current Organism:
Lactococcus lactis
NCBI taxonomy Id: 416870
Other names: L. lactis subsp. cremoris MG1363, Lactococcus lactis subsp. cremoris MG1363, Lactococcus lactis subsp. cremoris str. MG1363, Lactococcus lactis subsp. cremoris strain MG1363
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