STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
llmg_2020Uncharacterized protein conserved in bacteria. (147 aa)    
Predicted Functional Partners:
aspB
Aspartate aminotransferase (EC 2.6.1.1); High confidence in function and specificity.
  
    0.832
llmg_2018
Conserved hypothetical protein.
       0.773
asnS
asparaginyl-tRNA synthetase; High confidence in function and specificity.
       0.671
dinG
Probable ATP-dependent helicase dinG homolog; 3'-5' exonuclease.
  
    0.658
sbcC
ATP-dependent dsDNA exonuclease; High confidence in function and specificity.
  
     0.518
sbcD
Nuclease SbcCD subunit D; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
  
     0.511
pnuC1
PnuC1 protein; High confidence in function and specificity.
  
     0.494
llmg_0495
Uncharacterized protein conserved in bacteria.
  
    0.464
llmg_0515
Conserved hypothetical protein; Uncharacterised protein family (UPF0223); Belongs to the UPF0223 family.
  
     0.444
llmg_1727
ABC transporter permease protein.
  
     0.431
Your Current Organism:
Lactococcus lactis
NCBI taxonomy Id: 416870
Other names: L. lactis subsp. cremoris MG1363, Lactococcus lactis subsp. cremoris MG1363, Lactococcus lactis subsp. cremoris str. MG1363, Lactococcus lactis subsp. cremoris strain MG1363
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.