STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
llmg_2341Conserved hypothetical protein; ATPase (PilT family). (361 aa)    
Predicted Functional Partners:
llmg_2340
Hypothetical protein predicted by Glimmer/Critica; IPR009002: FMN-binding split barrel.
       0.598
ctsR
Transcriptional regulator ctsR; Firmicute transcriptional repressor of class III stress genes; High confidence in function and specificity; Belongs to the CtsR family.
 
    0.588
purR
Pur operon repressor; Controls the transcription of the pur operon for purine biosynthetic genes.
  
     0.537
radA
Putative ATP-dependent protease; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function.
  
  
 0.523
llmg_2342
Putative membrane protein; PF06912: Protein of unknown function DUF1275; Conserved hypothetical protein.
       0.438
llmg_2337
Conserved hypothetical protein; PF06304: Protein of unknown function (DUF1048).
       0.402
llmg_2338
Conserved hypothetical protein; PF06304: Protein of unknown function (DUF1048).
       0.402
llmg_2339
PF03551: Transcriptional regulator PadR-like family; Family membership.
       0.402
Your Current Organism:
Lactococcus lactis
NCBI taxonomy Id: 416870
Other names: L. lactis subsp. cremoris MG1363, Lactococcus lactis subsp. cremoris MG1363, Lactococcus lactis subsp. cremoris str. MG1363, Lactococcus lactis subsp. cremoris strain MG1363
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.