STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpmGC50S ribosomal protein L33; High confidence in function and specificity; Belongs to the bacterial ribosomal protein bL33 family. (49 aa)    
Predicted Functional Partners:
rpmD
PF00327: Ribosomal protein L30p/L7e, TIGR01308: ribosomal protein L30; High confidence in function and specificity.
  
 
 0.985
rpsN
30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.
  
 
 0.980
rpmF
Ribosomal L32p protein; High confidence in function and specificity; Belongs to the bacterial ribosomal protein bL32 family.
  
 
 0.979
rplX
50S ribosomal protein L24; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.
  
 
 0.979
rpmB
Ribosomal protein L28; Conserved hypothetical protein; Belongs to the bacterial ribosomal protein bL28 family.
  
 
 0.978
rpsU
Ribosomal protein S21; Family membership; Belongs to the bacterial ribosomal protein bS21 family.
   
 
 0.978
rpmI
Ribosomal protein L35; Conserved hypothetical protein; Belongs to the bacterial ribosomal protein bL35 family.
  
 
 0.978
rpsO
30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.
  
 
 0.977
rpsI
PF00380: Ribosomal protein S9/S16; High confidence in function and specificity; Belongs to the universal ribosomal protein uS9 family.
  
 
 0.967
rplW
50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.
  
 
 0.960
Your Current Organism:
Lactococcus lactis
NCBI taxonomy Id: 416870
Other names: L. lactis subsp. cremoris MG1363, Lactococcus lactis subsp. cremoris MG1363, Lactococcus lactis subsp. cremoris str. MG1363, Lactococcus lactis subsp. cremoris strain MG1363
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.