STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM98999.1TRAP-type C4-dicarboxylate transport system, substrate-binding protein. (351 aa)    
Predicted Functional Partners:
SDM98968.1
TRAP transporter, DctM subunit.
 
 
  0.881
SDM99027.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
  
  0.876
SDN51810.1
TRAP transporter, DctM subunit.
  
 
  0.800
SDO10491.1
TRAP transporter, DctM subunit.
  
 
  0.797
SDM93677.1
TRAP transporter, DctM subunit.
  
 
  0.792
SDN60272.1
TRAP transporter, DctM subunit.
  
 
  0.789
SDN05825.1
TRAP transporter, DctM subunit.
  
 
  0.786
SDO35428.1
TRAP transporter, DctM subunit.
  
 
  0.780
SDM93648.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
 
  0.768
SDN51772.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
 
  0.763
Your Current Organism:
Halomonas arcis
NCBI taxonomy Id: 416873
Other names: CGMCC 1.6494, H. arcis, Halomonas arcis Xu et al. 2007, Halomonas sp. AJ282, JCM 14607, LMG 23978, LMG:23978, strain AJ282
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