STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDN11342.1tRNA 2-thiouridine synthesizing protein D. (130 aa)    
Predicted Functional Partners:
SDN11290.1
tRNA 2-thiouridine synthesizing protein B.
  
 0.999
SDN11318.1
tRNA 2-thiouridine synthesizing protein C.
 
 0.999
SDN11266.1
tRNA 2-thiouridine synthesizing protein E; Part of a sulfur-relay system.
 
 
 0.997
SDO08703.1
tRNA 2-thiouridine synthesizing protein A.
 
 
 0.985
SDN81403.1
TusA-related sulfurtransferase; Belongs to the sulfur carrier protein TusA family.
 
 
 0.980
SDN11367.1
Modulator of FtsH protease; Belongs to the BI1 family.
       0.711
SDO37143.1
Acyl carrier protein phosphodiesterase.
       0.493
SDN22703.1
Uncharacterized protein.
  
     0.432
SDN11391.1
Dienelactone hydrolase.
       0.411
rapA
ATP-dependent helicase HepA; Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair; Belongs to the SNF2/RAD54 helicase family. RapA subfamily.
 
     0.408
Your Current Organism:
Halomonas arcis
NCBI taxonomy Id: 416873
Other names: CGMCC 1.6494, H. arcis, Halomonas arcis Xu et al. 2007, Halomonas sp. AJ282, JCM 14607, LMG 23978, LMG:23978, strain AJ282
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