STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDN20974.1phospholipid/cholesterol/gamma-HCH transport system permease protein. (266 aa)    
Predicted Functional Partners:
SDN20947.1
phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein.
 
 0.999
SDN21000.1
phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein.
 
 0.999
SDN21026.1
Phospholipid transport system substrate-binding protein.
 
 
 0.983
SDN21047.1
Phospholipid transport system transporter-binding protein.
  
 0.983
SDO37484.1
Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor).
   
  0.963
SDN20806.1
Lipopolysaccharide export system ATP-binding protein.
 
  
  0.837
SDN20901.1
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase); Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8- phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate; Belongs to the KdsC family.
 
    0.723
SDN20865.1
Lipopolysaccharide export system protein LptC.
     
 0.710
SDN20920.1
Arabinose-5-phosphate isomerase.
 
     0.680
lptA
Lipopolysaccharide export system protein LptA; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm.
       0.677
Your Current Organism:
Halomonas arcis
NCBI taxonomy Id: 416873
Other names: CGMCC 1.6494, H. arcis, Halomonas arcis Xu et al. 2007, Halomonas sp. AJ282, JCM 14607, LMG 23978, LMG:23978, strain AJ282
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