STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDN21000.1phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein. (154 aa)    
Predicted Functional Partners:
SDN20947.1
phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein.
 
 0.999
SDN20974.1
phospholipid/cholesterol/gamma-HCH transport system permease protein.
 
 0.999
SDN21026.1
Phospholipid transport system substrate-binding protein.
 
 0.997
SDN21047.1
Phospholipid transport system transporter-binding protein.
  
 0.986
SDO37484.1
Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor).
  
  0.964
SDO37413.1
Phospholipid-binding lipoprotein MlaA.
 
   
 0.804
murA
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
 
     0.705
SDN21077.1
Acid stress-induced BolA-like protein IbaG/YrbA, predicted regulator of iron metabolism; Belongs to the BolA/IbaG family.
     
 0.686
lptA
Lipopolysaccharide export system protein LptA; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm.
  
  
 0.683
SDN20865.1
Lipopolysaccharide export system protein LptC.
  
    0.673
Your Current Organism:
Halomonas arcis
NCBI taxonomy Id: 416873
Other names: CGMCC 1.6494, H. arcis, Halomonas arcis Xu et al. 2007, Halomonas sp. AJ282, JCM 14607, LMG 23978, LMG:23978, strain AJ282
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