STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDN34243.1Hypothetical protein. (58 aa)    
Predicted Functional Partners:
SDN34198.1
Alpha/beta hydrolase family protein.
       0.682
SDN12706.1
Serine/threonine protein kinase.
  
     0.593
SDN34167.1
Predicted small secreted protein.
       0.571
SDN61165.1
Hypothetical protein.
  
     0.555
SDO28157.1
ParE-like toxin of type II toxin-antitoxin system.
  
     0.480
SDO28127.1
ParD-like antitoxin of type II toxin-antitoxin system.
  
     0.465
SDN46984.1
TIGR03643 family protein.
  
     0.418
SDN88458.1
Transposase DDE domain-containing protein.
  
     0.403
Your Current Organism:
Halomonas arcis
NCBI taxonomy Id: 416873
Other names: CGMCC 1.6494, H. arcis, Halomonas arcis Xu et al. 2007, Halomonas sp. AJ282, JCM 14607, LMG 23978, LMG:23978, strain AJ282
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.