STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDN71789.1Polyketide cyclase / dehydrase and lipid transport. (144 aa)    
Predicted Functional Partners:
SDN71766.1
Uncharacterized protein, UPF0261 family; Belongs to the UPF0261 family.
 
  
 0.975
SDN71735.1
Predicted TIM-barrel enzyme.
 
  
 0.971
SDN71822.1
Predicted TIM-barrel enzyme.
 
  
 0.959
SDN71633.1
Branched-chain amino acid transport system substrate-binding protein.
 
     0.721
SDN71664.1
Branched-chain amino acid transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
       0.648
SDN71565.1
Branched-chain amino acid transport system ATP-binding protein.
       0.647
SDN71601.1
Branched-chain amino acid transport system ATP-binding protein.
       0.647
SDN71699.1
Branched-chain amino acid transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
       0.647
SDN73313.1
Predicted arabinose efflux permease, MFS family.
  
     0.613
SDO44909.1
Protein N-acetyltransferase, RimJ/RimL family.
  
     0.601
Your Current Organism:
Halomonas arcis
NCBI taxonomy Id: 416873
Other names: CGMCC 1.6494, H. arcis, Halomonas arcis Xu et al. 2007, Halomonas sp. AJ282, JCM 14607, LMG 23978, LMG:23978, strain AJ282
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