STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDN90077.1Diguanylate cyclase (GGDEF) domain-containing protein. (298 aa)    
Predicted Functional Partners:
SDM98181.1
PAS domain S-box-containing protein.
  
 0.997
SDM90392.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
 
0.997
SDO20320.1
PAS domain S-box-containing protein.
 0.997
SDN80718.1
PAS domain S-box-containing protein.
  
 0.994
SDN05503.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
0.993
SDN24174.1
Two-component system, NarL family, sensor histidine kinase BarA.
 0.993
SDN79112.1
Signal transduction histidine kinase.
 0.993
SDN08934.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
 0.986
SDM98319.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
0.985
SDN33838.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
 
0.985
Your Current Organism:
Halomonas arcis
NCBI taxonomy Id: 416873
Other names: CGMCC 1.6494, H. arcis, Halomonas arcis Xu et al. 2007, Halomonas sp. AJ282, JCM 14607, LMG 23978, LMG:23978, strain AJ282
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