STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO08670.1Hypothetical protein. (231 aa)    
Predicted Functional Partners:
SDN36922.1
dTDP-4-dehydrorhamnose reductase.
  
     0.756
SDO39713.1
NlpE N-terminal domain-containing protein.
  
     0.746
SDN81268.1
Beta-barrel assembly machine subunit BamC.
  
     0.743
SDN05171.1
SEC-C motif-containing protein.
  
     0.735
SDO13934.1
Hypothetical protein.
  
     0.706
SDN58442.1
Protein of unknown function.
  
     0.705
SDN20865.1
Lipopolysaccharide export system protein LptC.
  
     0.696
SDO32992.1
Hypothetical protein; Belongs to the UPF0149 family.
  
     0.685
SDN82946.1
3-oxoacyl-(acyl-carrier-protein) synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
  
     0.658
SDO08615.1
Multidrug resistance protein, MATE family.
       0.656
Your Current Organism:
Halomonas arcis
NCBI taxonomy Id: 416873
Other names: CGMCC 1.6494, H. arcis, Halomonas arcis Xu et al. 2007, Halomonas sp. AJ282, JCM 14607, LMG 23978, LMG:23978, strain AJ282
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.