STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO12507.1Malate/lactate/ureidoglycolate dehydrogenase, LDH2 family; Belongs to the LDH2/MDH2 oxidoreductase family. (341 aa)    
Predicted Functional Partners:
SDN09730.1
Fumarase, class I, homodimeric; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
    
 0.770
SDN45449.1
(2R)-sulfolactate sulfo-lyase subunit beta.
 
  
 0.716
SDN45485.1
(2R)-sulfolactate sulfo-lyase subunit alpha.
 
  
  0.678
SDN66526.1
Oxaloacetate decarboxylase, alpha subunit.
  
  
  0.664
SDN56108.1
Zn-dependent dipeptidase, dipeptidase homolog.
  
    0.660
SDO12533.1
NADP-dependent aldehyde dehydrogenase.
 
  
  0.639
SDM91884.1
4-hydroxyphenylpyruvate dioxygenase.
    
 0.635
SDO12485.1
Hypothetical protein.
       0.518
SDO12554.1
DNA-binding transcriptional regulator, FadR family.
       0.481
SDO12575.1
Uronate dehydrogenase.
       0.454
Your Current Organism:
Halomonas arcis
NCBI taxonomy Id: 416873
Other names: CGMCC 1.6494, H. arcis, Halomonas arcis Xu et al. 2007, Halomonas sp. AJ282, JCM 14607, LMG 23978, LMG:23978, strain AJ282
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