STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO22096.1Transposase DDE domain group 1. (73 aa)    
Predicted Functional Partners:
SDN88332.1
Homeodomain-like domain-containing protein.
 
     0.640
SDN62295.1
Transcriptional regulator, AlpA family.
  
     0.607
SDO22066.1
Hypothetical protein.
       0.566
SDN62570.1
Predicted Rossmann fold nucleotide-binding protein DprA/Smf involved in DNA uptake.
  
     0.543
SDO48104.1
Transposase DDE domain group 1.
  
     0.541
SDO42189.1
Transposase DDE domain group 1.
  
     0.527
SDN62446.1
ATP-dependent DNA helicase RecG.
  
     0.519
SDO28182.1
Hypothetical protein.
  
     0.508
SDN62322.1
Putative inner membrane protein.
  
     0.491
SDN62166.1
Transposase.
  
     0.440
Your Current Organism:
Halomonas arcis
NCBI taxonomy Id: 416873
Other names: CGMCC 1.6494, H. arcis, Halomonas arcis Xu et al. 2007, Halomonas sp. AJ282, JCM 14607, LMG 23978, LMG:23978, strain AJ282
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.