STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SER50591.1AraC-type DNA-binding protein. (324 aa)    
Predicted Functional Partners:
SER50618.1
Iron complex outermembrane recepter protein.
     0.863
SER90113.1
AraC-type DNA-binding protein.
  
     0.614
SES28306.1
Helix-turn-helix domain-containing protein.
  
   0.588
SER50648.1
Iron complex transport system substrate-binding protein.
 
    0.585
SER50557.1
Hypothetical protein.
       0.566
SER91497.1
Iron complex outermembrane recepter protein.
     0.515
SES35864.1
AraC-like ligand binding domain-containing protein.
  
     0.514
SER91841.1
Ferric iron reductase protein FhuF.
       0.485
SES26682.1
Helix-turn-helix domain-containing protein.
  
     0.477
SER92031.1
Outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid.
  
     0.475
Your Current Organism:
Halomonas subterranea
NCBI taxonomy Id: 416874
Other names: CGMCC 1.6495, H. subterranea, Halomonas sp. ZG16, Halomonas subterranea Xu et al. 2007, JCM 14608, LMG 23977, LMG:23977, strain ZG16
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