Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SER44346.1 | SER55349.1 | SAMN04487958_101134 | SAMN04487958_101538 | 4Fe-4S dicluster domain-containing protein. | Heptosyltransferase-2. | 0.822 |
SER44346.1 | SER55475.1 | SAMN04487958_101134 | SAMN04487958_101542 | 4Fe-4S dicluster domain-containing protein. | ADP-heptose:LPS heptosyltransferase. | 0.822 |
SER44346.1 | SER55610.1 | SAMN04487958_101134 | SAMN04487958_101546 | 4Fe-4S dicluster domain-containing protein. | Heptosyltransferase I. | 0.822 |
SER44346.1 | SER71729.1 | SAMN04487958_101134 | SAMN04487958_102376 | 4Fe-4S dicluster domain-containing protein. | NADH dehydrogenase subunit M. | 0.999 |
SER44346.1 | nuoN | SAMN04487958_101134 | SAMN04487958_102375 | 4Fe-4S dicluster domain-containing protein. | NADH dehydrogenase subunit N; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 2 family. | 0.998 |
SER55177.1 | SER55349.1 | SAMN04487958_101533 | SAMN04487958_101538 | D-alpha,beta-D-heptose 1,7-bisphosphate phosphatase. | Heptosyltransferase-2. | 0.925 |
SER55177.1 | SER55475.1 | SAMN04487958_101533 | SAMN04487958_101542 | D-alpha,beta-D-heptose 1,7-bisphosphate phosphatase. | ADP-heptose:LPS heptosyltransferase. | 0.565 |
SER55177.1 | SER55610.1 | SAMN04487958_101533 | SAMN04487958_101546 | D-alpha,beta-D-heptose 1,7-bisphosphate phosphatase. | Heptosyltransferase I. | 0.731 |
SER55177.1 | SER55670.1 | SAMN04487958_101533 | SAMN04487958_101548 | D-alpha,beta-D-heptose 1,7-bisphosphate phosphatase. | 3-deoxy-D-manno-octulosonic-acid transferase; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family. | 0.558 |
SER55177.1 | gmhA | SAMN04487958_101533 | SAMN04487958_102124 | D-alpha,beta-D-heptose 1,7-bisphosphate phosphatase. | Phosphoheptose isomerase; Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate. | 0.997 |
SER55177.1 | hldD | SAMN04487958_101533 | SAMN04487958_101537 | D-alpha,beta-D-heptose 1,7-bisphosphate phosphatase. | ADP-glyceromanno-heptose 6-epimerase precursor; Catalyzes the interconversion between ADP-D-glycero-beta-D- manno-heptose and ADP-L-glycero-beta-D-manno-heptose via an epimerization at carbon 6 of the heptose; Belongs to the NAD(P)-dependent epimerase/dehydratase family. HldD subfamily. | 0.785 |
SER55177.1 | hldE | SAMN04487958_101533 | SAMN04487958_101547 | D-alpha,beta-D-heptose 1,7-bisphosphate phosphatase. | D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase; Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno-heptose. In the N-terminal section; belongs to the carbohydrate kinase PfkB family. | 0.994 |
SER55349.1 | SER44346.1 | SAMN04487958_101538 | SAMN04487958_101134 | Heptosyltransferase-2. | 4Fe-4S dicluster domain-containing protein. | 0.822 |
SER55349.1 | SER55177.1 | SAMN04487958_101538 | SAMN04487958_101533 | Heptosyltransferase-2. | D-alpha,beta-D-heptose 1,7-bisphosphate phosphatase. | 0.925 |
SER55349.1 | SER55475.1 | SAMN04487958_101538 | SAMN04487958_101542 | Heptosyltransferase-2. | ADP-heptose:LPS heptosyltransferase. | 0.857 |
SER55349.1 | SER55610.1 | SAMN04487958_101538 | SAMN04487958_101546 | Heptosyltransferase-2. | Heptosyltransferase I. | 0.951 |
SER55349.1 | SER55670.1 | SAMN04487958_101538 | SAMN04487958_101548 | Heptosyltransferase-2. | 3-deoxy-D-manno-octulosonic-acid transferase; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family. | 0.965 |
SER55349.1 | SER71729.1 | SAMN04487958_101538 | SAMN04487958_102376 | Heptosyltransferase-2. | NADH dehydrogenase subunit M. | 0.823 |
SER55349.1 | gmhA | SAMN04487958_101538 | SAMN04487958_102124 | Heptosyltransferase-2. | Phosphoheptose isomerase; Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate. | 0.832 |
SER55349.1 | hldD | SAMN04487958_101538 | SAMN04487958_101537 | Heptosyltransferase-2. | ADP-glyceromanno-heptose 6-epimerase precursor; Catalyzes the interconversion between ADP-D-glycero-beta-D- manno-heptose and ADP-L-glycero-beta-D-manno-heptose via an epimerization at carbon 6 of the heptose; Belongs to the NAD(P)-dependent epimerase/dehydratase family. HldD subfamily. | 0.971 |
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