STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SER55380.1Phosphoglycerol transferase. (550 aa)    
Predicted Functional Partners:
SER93111.1
DnaJ domain-containing protein.
  
     0.714
SES05053.1
Membrane-bound lysozyme-inhibitor of c-type lysozyme.
  
     0.628
SER55444.1
Glycosyltransferase involved in cell wall bisynthesis.
  
  
 0.622
SER55475.1
ADP-heptose:LPS heptosyltransferase.
       0.608
SER50949.1
HD-GYP domain, c-di-GMP phosphodiesterase class II (or its inactivated variant).
  
     0.597
SES27007.1
Hypothetical protein.
  
     0.580
SES21467.1
Glycerophosphoryl diester phosphodiesterase.
 
   
 0.572
SES00901.1
Hook-length control protein FliK.
  
     0.550
SES35498.1
Nuclease-related domain-containing protein.
  
     0.544
SES21537.1
AAA ATPase domain-containing protein.
  
     0.541
Your Current Organism:
Halomonas subterranea
NCBI taxonomy Id: 416874
Other names: CGMCC 1.6495, H. subterranea, Halomonas sp. ZG16, Halomonas subterranea Xu et al. 2007, JCM 14608, LMG 23977, LMG:23977, strain ZG16
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