STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SER43158.1Nucleoside recognition GATE domain-containing membrane protein YjiH. (459 aa)    
Predicted Functional Partners:
SER43045.1
Betaine-aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
       0.855
SER43135.1
Acetolactate synthase-1/2/3 large subunit; Belongs to the TPP enzyme family.
       0.772
SER43079.1
Glyoxylase, beta-lactamase superfamily II.
       0.768
SER43106.1
Putative hydroxymethylpyrimidine transporter CytX; Belongs to the purine-cytosine permease (2.A.39) family.
       0.768
SER45529.1
Hypothetical protein.
  
     0.652
SES29102.1
Hypothetical protein.
  
     0.646
SES17592.1
Methyl-accepting chemotaxis protein.
 
      0.605
SER43192.1
Agmatinase; Belongs to the arginase family.
       0.560
SER43227.1
PAS domain S-box-containing protein/TyrR family helix-turn-helix domain-containing protein.
       0.530
SER43010.1
2,4-dihydroxyhept-2-enedioate aldolase; Belongs to the HpcH/HpaI aldolase family.
       0.515
Your Current Organism:
Halomonas subterranea
NCBI taxonomy Id: 416874
Other names: CGMCC 1.6495, H. subterranea, Halomonas sp. ZG16, Halomonas subterranea Xu et al. 2007, JCM 14608, LMG 23977, LMG:23977, strain ZG16
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