STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SER73848.13-hydroxyisobutyrate dehydrogenase. (310 aa)    
Predicted Functional Partners:
SER73825.1
Uncharacterized conserved protein YgbK, DUF1537 family.
 
    0.924
SER73731.1
Hydroxypyruvate isomerase; Belongs to the hyi family.
 
 0.912
SER73753.1
Ribulose-5-phosphate 4-epimerase/Fuculose-1-phosphate aldolase.
 
    0.894
SER73706.1
Nucleoside-diphosphate-sugar epimerase.
 
     0.830
SER48286.1
Uncharacterized conserved protein YgbK, DUF1537 family.
 
    0.677
SER73869.1
Transcriptional regulator, LacI family.
   
   0.631
SER48665.1
4-carboxymuconolactone decarboxylase.
  
 
  0.591
SER45375.1
Methylmalonate-semialdehyde dehydrogenase [acylating].
   
 
  0.561
SER47173.1
Malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase.
   
 
  0.561
SER88271.1
Malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase.
   
 
  0.561
Your Current Organism:
Halomonas subterranea
NCBI taxonomy Id: 416874
Other names: CGMCC 1.6495, H. subterranea, Halomonas sp. ZG16, Halomonas subterranea Xu et al. 2007, JCM 14608, LMG 23977, LMG:23977, strain ZG16
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