STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SER81278.1Predicted choloylglycine hydrolase. (347 aa)    
Predicted Functional Partners:
SER81296.1
Hypothetical protein.
 
     0.969
SER81317.1
Predicted amidohydrolase.
 
     0.955
SER81262.1
Arginine decarboxylase.
 
     0.947
SER81245.1
Succinate semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
       0.589
SER81354.1
N-alpha-acetyl-L-2,4-diaminobutyrate deacetylase.
 
     0.546
SER81335.1
Transcriptional regulator, AsnC family.
       0.470
SER81376.1
Ectoine hydrolase.
       0.435
SER42170.1
Beta-lactamase class A.
    
  0.406
Your Current Organism:
Halomonas subterranea
NCBI taxonomy Id: 416874
Other names: CGMCC 1.6495, H. subterranea, Halomonas sp. ZG16, Halomonas subterranea Xu et al. 2007, JCM 14608, LMG 23977, LMG:23977, strain ZG16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.