Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SES26705.1 | SES28383.1 | SAMN04487958_11190 | SAMN04487958_11236 | L-proline dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. | Chorismate mutase. | 0.627 |
SES26705.1 | SES30543.1 | SAMN04487958_11190 | SAMN04487958_11347 | L-proline dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. | Glutamate synthase (NADPH/NADH) large chain. | 0.951 |
SES26705.1 | argA | SAMN04487958_11190 | SAMN04487958_11390 | L-proline dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. | N-acetylglutamate synthase; Belongs to the acetyltransferase family. ArgA subfamily. | 0.444 |
SES26705.1 | argD | SAMN04487958_11190 | SAMN04487958_10453 | L-proline dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. | acetylornithine/N-succinyldiaminopimelate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. | 0.904 |
SES26705.1 | proA | SAMN04487958_11190 | SAMN04487958_10939 | L-proline dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. | Glutamate-5-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent reduction of L-glutamate 5- phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Belongs to the gamma-glutamyl phosphate reductase family. | 0.950 |
SES26705.1 | proB | SAMN04487958_11190 | SAMN04487958_10576 | L-proline dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. | Glutamate 5-kinase; Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate. | 0.953 |
SES26705.1 | proC | SAMN04487958_11190 | SAMN04487958_1056 | L-proline dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. | Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline. | 0.968 |
SES28383.1 | SES26705.1 | SAMN04487958_11236 | SAMN04487958_11190 | Chorismate mutase. | L-proline dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. | 0.627 |
SES28383.1 | SES30543.1 | SAMN04487958_11236 | SAMN04487958_11347 | Chorismate mutase. | Glutamate synthase (NADPH/NADH) large chain. | 0.659 |
SES28383.1 | argA | SAMN04487958_11236 | SAMN04487958_11390 | Chorismate mutase. | N-acetylglutamate synthase; Belongs to the acetyltransferase family. ArgA subfamily. | 0.523 |
SES28383.1 | argD | SAMN04487958_11236 | SAMN04487958_10453 | Chorismate mutase. | acetylornithine/N-succinyldiaminopimelate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. | 0.502 |
SES28383.1 | proA | SAMN04487958_11236 | SAMN04487958_10939 | Chorismate mutase. | Glutamate-5-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent reduction of L-glutamate 5- phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Belongs to the gamma-glutamyl phosphate reductase family. | 0.549 |
SES28383.1 | proB | SAMN04487958_11236 | SAMN04487958_10576 | Chorismate mutase. | Glutamate 5-kinase; Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate. | 0.572 |
SES28383.1 | proC | SAMN04487958_11236 | SAMN04487958_1056 | Chorismate mutase. | Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline. | 0.491 |
SES28383.1 | rplU | SAMN04487958_11236 | SAMN04487958_10579 | Chorismate mutase. | LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.479 |
SES28383.1 | rpmA | SAMN04487958_11236 | SAMN04487958_10578 | Chorismate mutase. | LSU ribosomal protein L27P; Belongs to the bacterial ribosomal protein bL27 family. | 0.499 |
SES30543.1 | SES26705.1 | SAMN04487958_11347 | SAMN04487958_11190 | Glutamate synthase (NADPH/NADH) large chain. | L-proline dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. | 0.951 |
SES30543.1 | SES28383.1 | SAMN04487958_11347 | SAMN04487958_11236 | Glutamate synthase (NADPH/NADH) large chain. | Chorismate mutase. | 0.659 |
SES30543.1 | argA | SAMN04487958_11347 | SAMN04487958_11390 | Glutamate synthase (NADPH/NADH) large chain. | N-acetylglutamate synthase; Belongs to the acetyltransferase family. ArgA subfamily. | 0.795 |
SES30543.1 | argD | SAMN04487958_11347 | SAMN04487958_10453 | Glutamate synthase (NADPH/NADH) large chain. | acetylornithine/N-succinyldiaminopimelate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. | 0.752 |
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