STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SER97833.1Hypothetical protein. (260 aa)    
Predicted Functional Partners:
SER97857.1
Rad3-related DNA helicase.
  
    0.806
SER97880.1
VRR-NUC domain-containing protein; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family.
       0.806
SES22662.1
Hypothetical protein.
  
    0.717
SES25892.1
Adenosylcobinamide kinase.
  
     0.691
SES00349.1
Ribonucleoside-diphosphate reductase alpha chain.
  
     0.637
SER97899.1
Hypothetical protein.
       0.619
SES27106.1
Protein of unknown function.
  
     0.584
SES27151.1
Heme-degrading monooxygenase HmoA.
  
     0.574
SES23736.1
Hypothetical protein.
  
    0.565
SES32614.1
Hypothetical protein.
  
     0.562
Your Current Organism:
Halomonas subterranea
NCBI taxonomy Id: 416874
Other names: CGMCC 1.6495, H. subterranea, Halomonas sp. ZG16, Halomonas subterranea Xu et al. 2007, JCM 14608, LMG 23977, LMG:23977, strain ZG16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.