Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SER51872.1 | SES06231.1 | SAMN04487958_101414 | SAMN04487958_106174 | Thiol:disulfide interchange protein DsbA. | Thiol:disulfide interchange protein DsbC; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process; Belongs to the thioredoxin family. DsbC subfamily. | 0.702 |
SER51872.1 | SES06356.1 | SAMN04487958_101414 | SAMN04487958_106181 | Thiol:disulfide interchange protein DsbA. | ABC-type uncharacterized transport system, permease component. | 0.625 |
SER51872.1 | dsbB | SAMN04487958_101414 | SAMN04487958_102286 | Thiol:disulfide interchange protein DsbA. | Disulfide bond formation protein DsbB; Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein; Belongs to the DsbB family. | 0.639 |
SES06172.1 | SES06186.1 | SAMN04487958_106170 | SAMN04487958_106171 | Uncharacterised 5xTM membrane BCR, YitT family COG1284. | single-stranded-DNA-specific exonuclease. | 0.797 |
SES06172.1 | SES06202.1 | SAMN04487958_106170 | SAMN04487958_106172 | Uncharacterised 5xTM membrane BCR, YitT family COG1284. | L-threonine synthase. | 0.797 |
SES06172.1 | SES06216.1 | SAMN04487958_106170 | SAMN04487958_106173 | Uncharacterised 5xTM membrane BCR, YitT family COG1284. | Homoserine dehydrogenase. | 0.797 |
SES06172.1 | SES06231.1 | SAMN04487958_106170 | SAMN04487958_106174 | Uncharacterised 5xTM membrane BCR, YitT family COG1284. | Thiol:disulfide interchange protein DsbC; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process; Belongs to the thioredoxin family. DsbC subfamily. | 0.702 |
SES06172.1 | rplS | SAMN04487958_106170 | SAMN04487958_106176 | Uncharacterised 5xTM membrane BCR, YitT family COG1284. | LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.510 |
SES06172.1 | xerD | SAMN04487958_106170 | SAMN04487958_106175 | Uncharacterised 5xTM membrane BCR, YitT family COG1284. | Integrase/recombinase XerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. | 0.703 |
SES06186.1 | SES06172.1 | SAMN04487958_106171 | SAMN04487958_106170 | single-stranded-DNA-specific exonuclease. | Uncharacterised 5xTM membrane BCR, YitT family COG1284. | 0.797 |
SES06186.1 | SES06202.1 | SAMN04487958_106171 | SAMN04487958_106172 | single-stranded-DNA-specific exonuclease. | L-threonine synthase. | 0.869 |
SES06186.1 | SES06216.1 | SAMN04487958_106171 | SAMN04487958_106173 | single-stranded-DNA-specific exonuclease. | Homoserine dehydrogenase. | 0.869 |
SES06186.1 | SES06231.1 | SAMN04487958_106171 | SAMN04487958_106174 | single-stranded-DNA-specific exonuclease. | Thiol:disulfide interchange protein DsbC; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process; Belongs to the thioredoxin family. DsbC subfamily. | 0.752 |
SES06186.1 | rplS | SAMN04487958_106171 | SAMN04487958_106176 | single-stranded-DNA-specific exonuclease. | LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.659 |
SES06186.1 | xerD | SAMN04487958_106171 | SAMN04487958_106175 | single-stranded-DNA-specific exonuclease. | Integrase/recombinase XerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. | 0.763 |
SES06202.1 | SES06172.1 | SAMN04487958_106172 | SAMN04487958_106170 | L-threonine synthase. | Uncharacterised 5xTM membrane BCR, YitT family COG1284. | 0.797 |
SES06202.1 | SES06186.1 | SAMN04487958_106172 | SAMN04487958_106171 | L-threonine synthase. | single-stranded-DNA-specific exonuclease. | 0.869 |
SES06202.1 | SES06216.1 | SAMN04487958_106172 | SAMN04487958_106173 | L-threonine synthase. | Homoserine dehydrogenase. | 0.997 |
SES06202.1 | SES06231.1 | SAMN04487958_106172 | SAMN04487958_106174 | L-threonine synthase. | Thiol:disulfide interchange protein DsbC; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process; Belongs to the thioredoxin family. DsbC subfamily. | 0.752 |
SES06202.1 | rplS | SAMN04487958_106172 | SAMN04487958_106176 | L-threonine synthase. | LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.689 |
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