STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SES15512.1PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein. (329 aa)    
Predicted Functional Partners:
SER62137.1
Two-component system, NarL family, sensor histidine kinase BarA.
 0.997
SER80624.1
PAS domain S-box-containing protein.
 0.996
SER81973.1
Signal transduction histidine kinase.
 0.991
SER83256.1
PAS domain S-box-containing protein.
  
 0.986
SER47492.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
0.983
SES15522.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
0.953
SES15889.1
Ammonium transporter, Amt family.
 
0.945
SES00159.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
 
0.939
SES17248.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 0.898
SER79731.1
EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant).
 
 
  0.834
Your Current Organism:
Halomonas subterranea
NCBI taxonomy Id: 416874
Other names: CGMCC 1.6495, H. subterranea, Halomonas sp. ZG16, Halomonas subterranea Xu et al. 2007, JCM 14608, LMG 23977, LMG:23977, strain ZG16
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