STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SES19683.1Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily. (338 aa)    
Predicted Functional Partners:
SES19700.1
Peptide/nickel transport system permease protein.
 
 0.999
SES19716.1
Peptide/nickel transport system permease protein.
 
 0.995
SES19731.1
Peptide/nickel transport system substrate-binding protein.
 
 
 0.980
SER73416.1
Peptide/nickel transport system permease protein.
 
 0.976
SES19666.1
Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
  
 
0.954
SER73392.1
Peptide/nickel transport system permease protein.
 
 0.926
SER73465.1
Peptide/nickel transport system ATP-binding protein.
 
 
0.923
SER73366.1
Peptide/nickel transport system substrate-binding protein.
 
 
 0.827
SES17537.1
Microcin C transport system permease protein.
  
 0.820
SES19644.1
DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
 
     0.820
Your Current Organism:
Halomonas subterranea
NCBI taxonomy Id: 416874
Other names: CGMCC 1.6495, H. subterranea, Halomonas sp. ZG16, Halomonas subterranea Xu et al. 2007, JCM 14608, LMG 23977, LMG:23977, strain ZG16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.