STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SES20472.1Ribonuclease toxin, BrnT, of type II toxin-antitoxin system. (111 aa)    
Predicted Functional Partners:
SES20486.1
Predicted DNA binding protein, CopG/RHH family.
 
     0.953
SER97786.1
Uncharacterized conserved protein, DUF4415 family.
  
   0.840
SES20458.1
Histidine phosphatase superfamily (branch 1).
       0.675
SES20442.1
Hypothetical protein.
       0.485
SER73563.1
Probable addiction module antidote protein.
  
     0.467
Your Current Organism:
Halomonas subterranea
NCBI taxonomy Id: 416874
Other names: CGMCC 1.6495, H. subterranea, Halomonas sp. ZG16, Halomonas subterranea Xu et al. 2007, JCM 14608, LMG 23977, LMG:23977, strain ZG16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.