STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SES23939.1Hypothetical protein. (162 aa)    
Predicted Functional Partners:
SES23921.1
Zn-dependent peptidase ImmA, M78 family.
 
    0.953
SES30231.1
Protein of unknown function.
 
    0.799
SES23736.1
Hypothetical protein.
  
     0.754
SES31014.1
EamA-like transporter family protein.
  
     0.739
SER98320.1
Membrane-bound acyltransferase YfiQ, involved in biofilm formation.
  
     0.736
SES31654.1
CAAX protease self-immunity.
  
     0.686
SER49406.1
Putative tricarboxylic transport membrane protein.
  
     0.620
SER42170.1
Beta-lactamase class A.
  
     0.559
SER79444.1
HAMP domain-containing protein.
  
     0.536
SES31024.1
DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.464
Your Current Organism:
Halomonas subterranea
NCBI taxonomy Id: 416874
Other names: CGMCC 1.6495, H. subterranea, Halomonas sp. ZG16, Halomonas subterranea Xu et al. 2007, JCM 14608, LMG 23977, LMG:23977, strain ZG16
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