STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SES26819.1Cysteine desulfurase / selenocysteine lyase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. (421 aa)    
Predicted Functional Partners:
SES16749.1
Cysteine desulfuration protein SufE.
 0.998
SES26845.1
Iron-regulated ABC transporter ATPase subunit SufC.
 
  
 0.998
SES26831.1
Fe-S cluster assembly protein SufD.
 
 
 0.995
SES26860.1
Iron-regulated ABC transporter membrane component SufB.
 
 
 0.993
SES26805.1
Probable FeS assembly SUF system protein SufT.
 
  
 0.956
SER51845.1
Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family.
    
   0.943
selD
Selenophosphate synthase; Synthesizes selenophosphate from selenide and ATP.
   
 0.920
SES26794.1
SanA protein.
       0.843
SES04995.1
Sulfide:quinone oxidoreductase.
    
 0.841
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
    
  0.831
Your Current Organism:
Halomonas subterranea
NCBI taxonomy Id: 416874
Other names: CGMCC 1.6495, H. subterranea, Halomonas sp. ZG16, Halomonas subterranea Xu et al. 2007, JCM 14608, LMG 23977, LMG:23977, strain ZG16
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