STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SES30470.1Type IV pilus assembly protein PilN. (187 aa)    
Predicted Functional Partners:
SES30456.1
Type IV pilus assembly protein PilM.
 
 0.999
SES30485.1
Type IV pilus assembly protein PilO.
 
 
 0.999
SES30496.1
Type IV pilus assembly protein PilP.
 
 
 0.999
SES30507.1
Type IV pilus assembly protein PilQ.
 
 
 0.998
SES03869.1
LysM domain-containing protein.
  
 
   0.949
SES28209.1
Type IV pilus assembly protein PilB.
 
 
 
 0.946
SES28220.1
Type IV pilus assembly protein PilC.
 
 
 
 0.916
SES20628.1
Pilus assembly protein FimV.
  
    0.807
SER63301.1
Type IV pilus assembly protein PilZ.
  
   
 0.804
aroB
3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ).
  
    0.785
Your Current Organism:
Halomonas subterranea
NCBI taxonomy Id: 416874
Other names: CGMCC 1.6495, H. subterranea, Halomonas sp. ZG16, Halomonas subterranea Xu et al. 2007, JCM 14608, LMG 23977, LMG:23977, strain ZG16
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