STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SES31997.1Predicted arabinose efflux permease, MFS family. (457 aa)    
Predicted Functional Partners:
SES31978.1
Methyltransferase domain-containing protein.
       0.708
SES31966.1
Catechol 2,3-dioxygenase.
    
  0.639
SES32027.1
3-hydroxyacyl-CoA dehydrogenase.
       0.624
SES32010.1
Acyl-CoA dehydrogenase.
       0.563
SES32039.1
enoyl-CoA hydratase.
       0.551
SES31952.1
Uncharacterized membrane protein.
       0.501
SER46234.1
Sodium:solute symporter family protein; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
    0.488
SER93636.1
Biotin-lipoyl like.
  
   0.441
SER70119.1
YqaJ-like recombinase domain-containing protein.
  
     0.431
SES23970.1
YqaJ-like recombinase domain-containing protein.
  
     0.426
Your Current Organism:
Halomonas subterranea
NCBI taxonomy Id: 416874
Other names: CGMCC 1.6495, H. subterranea, Halomonas sp. ZG16, Halomonas subterranea Xu et al. 2007, JCM 14608, LMG 23977, LMG:23977, strain ZG16
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