STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
jhhlp_008446UPF0020 domain-containing protein. (445 aa)    
Predicted Functional Partners:
jhhlp_002519
Uncharacterized protein.
   
 0.987
jhhlp_002409
TPR_REGION domain-containing protein.
 
 
    0.931
jhhlp_003329
Deacetylase sirtuin-type domain-containing protein.
      0.904
jhhlp_003544
WD_REPEATS_REGION domain-containing protein.
   
    0.835
jhhlp_006922
Uncharacterized protein.
   
  
 0.824
YTM1
Ribosome biogenesis protein YTM1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
   0.806
jhhlp_005902
Uncharacterized protein.
   
    0.772
jhhlp_002284
Brix domain-containing protein.
   
    0.771
jhhlp_007390
Uncharacterized protein.
   
    0.767
jhhlp_000864
rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.
   
  
 0.762
Your Current Organism:
Lomentospora prolificans
NCBI taxonomy Id: 41688
Other names: CBS 467.74, IMI 188615, L. prolificans, MUCL 18141, Scedosporium inflatum, Scedosporium prolificans
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