jhhlp_006941 protein (Lomentospora prolificans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

jhhlp_006941

Uncharacterized protein. (121 aa)

Predicted Functional Partners:

jhhlp_004082

0.746

jhhlp_004102

0.722

NOP7

0.713

ERB1

0.667

jhhlp_002966

0.618

jhhlp_001927

0.599

jhhlp_001188

0.599

jhhlp_008625

0.594

jhhlp_007165

0.577

jhhlp_004572

0.572

Your Current Organism:

Lomentospora prolificans

NCBI taxonomy Id: 41688
Other names: CBS 467.74, IMI 188615, L. prolificans, MUCL 18141, Scedosporium inflatum, Scedosporium prolificans

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ERB1	NOP7	A0A2N3NHU0	A0A2N3N774	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.999
ERB1	jhhlp_002966	A0A2N3NHU0	A0A2N3NFL2	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	CLP1_P domain-containing protein.	0.882
ERB1	jhhlp_004082	A0A2N3NHU0	A0A2N3NAJ5	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	WD_REPEATS_REGION domain-containing protein.	0.985
ERB1	jhhlp_004102	A0A2N3NHU0	A0A2N3NAK9	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Ipi1_N domain-containing protein.	0.880
ERB1	jhhlp_006941	A0A2N3NHU0	A0A2N3N356	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Uncharacterized protein.	0.667
ERB1	jhhlp_007165	A0A2N3NHU0	A0A2N3N1W4	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	CP-type G domain-containing protein.	0.999
ERB1	jhhlp_008625	A0A2N3NHU0	A0A2N3MYJ5	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Uncharacterized protein.	0.874
NOP7	ERB1	A0A2N3N774	A0A2N3NHU0	Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.999
NOP7	jhhlp_002966	A0A2N3N774	A0A2N3NFL2	Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	CLP1_P domain-containing protein.	0.809
NOP7	jhhlp_004082	A0A2N3N774	A0A2N3NAJ5	Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	WD_REPEATS_REGION domain-containing protein.	0.974
NOP7	jhhlp_004102	A0A2N3N774	A0A2N3NAK9	Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Ipi1_N domain-containing protein.	0.909
NOP7	jhhlp_006941	A0A2N3N774	A0A2N3N356	Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Uncharacterized protein.	0.713
NOP7	jhhlp_007165	A0A2N3N774	A0A2N3N1W4	Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	CP-type G domain-containing protein.	0.999
NOP7	jhhlp_008625	A0A2N3N774	A0A2N3MYJ5	Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Uncharacterized protein.	0.851
jhhlp_001188	jhhlp_006941	A0A2N3NHI4	A0A2N3N356	CRIB domain-containing protein.	Uncharacterized protein.	0.599
jhhlp_001927	jhhlp_006941	A0A2N3NCP7	A0A2N3N356	Uncharacterized protein.	Uncharacterized protein.	0.599
jhhlp_002966	ERB1	A0A2N3NFL2	A0A2N3NHU0	CLP1_P domain-containing protein.	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.882
jhhlp_002966	NOP7	A0A2N3NFL2	A0A2N3N774	CLP1_P domain-containing protein.	Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.809
jhhlp_002966	jhhlp_004082	A0A2N3NFL2	A0A2N3NAJ5	CLP1_P domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.990
jhhlp_002966	jhhlp_004102	A0A2N3NFL2	A0A2N3NAK9	CLP1_P domain-containing protein.	Ipi1_N domain-containing protein.	0.963