jhhlp_006172 protein (Lomentospora prolificans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

jhhlp_006172

Uncharacterized protein. (266 aa)

Predicted Functional Partners:

jhhlp_003393

0.651

jhhlp_003257

0.647

jhhlp_002465

0.644

jhhlp_007908

0.637

jhhlp_001164

0.637

jhhlp_007834

0.636

jhhlp_008590

0.635

jhhlp_005947

0.596

jhhlp_008310

0.593

jhhlp_000192

0.593

Your Current Organism:

Lomentospora prolificans

NCBI taxonomy Id: 41688
Other names: CBS 467.74, IMI 188615, L. prolificans, MUCL 18141, Scedosporium inflatum, Scedosporium prolificans

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
jhhlp_000192	jhhlp_002465	A0A2N3NKG1	A0A2N3NE47	BZIP domain-containing protein.	UBA domain-containing protein.	0.678
jhhlp_000192	jhhlp_003257	A0A2N3NKG1	A0A2N3NGC7	BZIP domain-containing protein.	Uncharacterized protein.	0.963
jhhlp_000192	jhhlp_003393	A0A2N3NKG1	A0A2N3N8P7	BZIP domain-containing protein.	Uncharacterized protein.	0.733
jhhlp_000192	jhhlp_005947	A0A2N3NKG1	A0A2N3N4J5	BZIP domain-containing protein.	Phosphatase tensin-type domain-containing protein.	0.702
jhhlp_000192	jhhlp_006172	A0A2N3NKG1	A0A2N3N559	BZIP domain-containing protein.	Uncharacterized protein.	0.593
jhhlp_001164	jhhlp_005947	A0A2N3NHG2	A0A2N3N4J5	Uncharacterized protein; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.	Phosphatase tensin-type domain-containing protein.	0.441
jhhlp_001164	jhhlp_006172	A0A2N3NHG2	A0A2N3N559	Uncharacterized protein; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.	Uncharacterized protein.	0.637
jhhlp_001164	jhhlp_007908	A0A2N3NHG2	A0A2N3N0X0	Uncharacterized protein; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.	Uncharacterized protein.	0.893
jhhlp_002465	jhhlp_000192	A0A2N3NE47	A0A2N3NKG1	UBA domain-containing protein.	BZIP domain-containing protein.	0.678
jhhlp_002465	jhhlp_003257	A0A2N3NE47	A0A2N3NGC7	UBA domain-containing protein.	Uncharacterized protein.	0.918
jhhlp_002465	jhhlp_005947	A0A2N3NE47	A0A2N3N4J5	UBA domain-containing protein.	Phosphatase tensin-type domain-containing protein.	0.652
jhhlp_002465	jhhlp_006172	A0A2N3NE47	A0A2N3N559	UBA domain-containing protein.	Uncharacterized protein.	0.644
jhhlp_002465	jhhlp_008310	A0A2N3NE47	A0A2N3MXQ1	UBA domain-containing protein.	Ubiquitin-like domain-containing protein.	0.678
jhhlp_003257	jhhlp_000192	A0A2N3NGC7	A0A2N3NKG1	Uncharacterized protein.	BZIP domain-containing protein.	0.963
jhhlp_003257	jhhlp_002465	A0A2N3NGC7	A0A2N3NE47	Uncharacterized protein.	UBA domain-containing protein.	0.918
jhhlp_003257	jhhlp_003393	A0A2N3NGC7	A0A2N3N8P7	Uncharacterized protein.	Uncharacterized protein.	0.725
jhhlp_003257	jhhlp_005947	A0A2N3NGC7	A0A2N3N4J5	Uncharacterized protein.	Phosphatase tensin-type domain-containing protein.	0.764
jhhlp_003257	jhhlp_006172	A0A2N3NGC7	A0A2N3N559	Uncharacterized protein.	Uncharacterized protein.	0.647
jhhlp_003257	jhhlp_008310	A0A2N3NGC7	A0A2N3MXQ1	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.973
jhhlp_003393	jhhlp_000192	A0A2N3N8P7	A0A2N3NKG1	Uncharacterized protein.	BZIP domain-containing protein.	0.733