jhhlp_005456 protein (Lomentospora prolificans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

jhhlp_005456

Fungal_trans domain-containing protein. (599 aa)

Predicted Functional Partners:

jhhlp_007735

0.863

jhhlp_008892

0.813

jhhlp_001445

0.770

jhhlp_001367

0.755

jhhlp_004387

0.745

jhhlp_002592

0.719

jhhlp_005206

0.712

jhhlp_005205

0.712

jhhlp_008120

0.704

jhhlp_003467

0.695

Your Current Organism:

Lomentospora prolificans

NCBI taxonomy Id: 41688
Other names: CBS 467.74, IMI 188615, L. prolificans, MUCL 18141, Scedosporium inflatum, Scedosporium prolificans

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
jhhlp_001367	jhhlp_003467	A0A2N3NI34	A0A2N3N8T7	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.993
jhhlp_001367	jhhlp_005205	A0A2N3NI34	A0A2N3N7A6	Uncharacterized protein.	Uncharacterized protein.	0.417
jhhlp_001367	jhhlp_005206	A0A2N3NI34	A0A2N3N745	Uncharacterized protein.	MPN domain-containing protein.	0.418
jhhlp_001367	jhhlp_005456	A0A2N3NI34	A0A2N3N6V4	Uncharacterized protein.	Fungal_trans domain-containing protein.	0.755
jhhlp_001445	jhhlp_003467	A0A2N3NI78	A0A2N3N8T7	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.543
jhhlp_001445	jhhlp_004387	A0A2N3NI78	A0A2N3NBE5	Uncharacterized protein.	Uncharacterized protein.	0.951
jhhlp_001445	jhhlp_005205	A0A2N3NI78	A0A2N3N7A6	Uncharacterized protein.	Uncharacterized protein.	0.467
jhhlp_001445	jhhlp_005206	A0A2N3NI78	A0A2N3N745	Uncharacterized protein.	MPN domain-containing protein.	0.467
jhhlp_001445	jhhlp_005456	A0A2N3NI78	A0A2N3N6V4	Uncharacterized protein.	Fungal_trans domain-containing protein.	0.770
jhhlp_001445	jhhlp_007735	A0A2N3NI78	A0A2N3N0E8	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.854
jhhlp_001445	jhhlp_008120	A0A2N3NI78	A0A2N3MZL6	Uncharacterized protein.	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	0.480
jhhlp_001445	jhhlp_008892	A0A2N3NI78	A0A2N3MXE7	Uncharacterized protein.	CYTB_NTER domain-containing protein.	0.416
jhhlp_002592	jhhlp_005456	A0A2N3NEH1	A0A2N3N6V4	Uncharacterized protein.	Fungal_trans domain-containing protein.	0.719
jhhlp_003467	jhhlp_001367	A0A2N3N8T7	A0A2N3NI34	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.993
jhhlp_003467	jhhlp_001445	A0A2N3N8T7	A0A2N3NI78	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.543
jhhlp_003467	jhhlp_004387	A0A2N3N8T7	A0A2N3NBE5	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.486
jhhlp_003467	jhhlp_005205	A0A2N3N8T7	A0A2N3N7A6	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.877
jhhlp_003467	jhhlp_005206	A0A2N3N8T7	A0A2N3N745	Ubiquitin-like domain-containing protein.	MPN domain-containing protein.	0.877
jhhlp_003467	jhhlp_005456	A0A2N3N8T7	A0A2N3N6V4	Ubiquitin-like domain-containing protein.	Fungal_trans domain-containing protein.	0.695
jhhlp_003467	jhhlp_007735	A0A2N3N8T7	A0A2N3N0E8	Ubiquitin-like domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.922