jhhlp_003507 protein (Lomentospora prolificans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

jhhlp_003507

Uncharacterized protein. (784 aa)

Predicted Functional Partners:

jhhlp_003125

0.805

jhhlp_001505

0.795

jhhlp_001052

0.791

jhhlp_003566

0.777

jhhlp_003567

0.767

jhhlp_002212

0.750

jhhlp_002328

0.750

jhhlp_001988

0.743

jhhlp_000354

0.737

jhhlp_001914

0.735

Your Current Organism:

Lomentospora prolificans

NCBI taxonomy Id: 41688
Other names: CBS 467.74, IMI 188615, L. prolificans, MUCL 18141, Scedosporium inflatum, Scedosporium prolificans

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
jhhlp_000354	jhhlp_002212	A0A2N3NKP4	A0A2N3NDG0	Uncharacterized protein.	Vezatin domain-containing protein.	0.936
jhhlp_000354	jhhlp_002328	A0A2N3NKP4	A0A2N3NDR8	Uncharacterized protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.936
jhhlp_000354	jhhlp_003125	A0A2N3NKP4	A0A2N3NFZ9	Uncharacterized protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.630
jhhlp_000354	jhhlp_003507	A0A2N3NKP4	A0A2N3N904	Uncharacterized protein.	Uncharacterized protein.	0.737
jhhlp_001052	jhhlp_001505	A0A2N3NK81	A0A2N3NIC8	Uncharacterized protein; Belongs to the actin family.	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	0.993
jhhlp_001052	jhhlp_001914	A0A2N3NK81	A0A2N3NCI2	Uncharacterized protein; Belongs to the actin family.	Uncharacterized protein.	0.515
jhhlp_001052	jhhlp_003507	A0A2N3NK81	A0A2N3N904	Uncharacterized protein; Belongs to the actin family.	Uncharacterized protein.	0.791
jhhlp_001052	jhhlp_003566	A0A2N3NK81	A0A2N3N931	Uncharacterized protein; Belongs to the actin family.	Uncharacterized protein; Belongs to the actin family.	0.984
jhhlp_001052	jhhlp_003567	A0A2N3NK81	A0A2N3N965	Uncharacterized protein; Belongs to the actin family.	YL1_C domain-containing protein.	0.981
jhhlp_001505	jhhlp_001052	A0A2N3NIC8	A0A2N3NK81	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	Uncharacterized protein; Belongs to the actin family.	0.993
jhhlp_001505	jhhlp_003507	A0A2N3NIC8	A0A2N3N904	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	Uncharacterized protein.	0.795
jhhlp_001505	jhhlp_003566	A0A2N3NIC8	A0A2N3N931	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	Uncharacterized protein; Belongs to the actin family.	0.998
jhhlp_001505	jhhlp_003567	A0A2N3NIC8	A0A2N3N965	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	YL1_C domain-containing protein.	0.996
jhhlp_001914	jhhlp_001052	A0A2N3NCI2	A0A2N3NK81	Uncharacterized protein.	Uncharacterized protein; Belongs to the actin family.	0.515
jhhlp_001914	jhhlp_001988	A0A2N3NCI2	A0A2N3NCT7	Uncharacterized protein.	Uncharacterized protein.	0.652
jhhlp_001914	jhhlp_003507	A0A2N3NCI2	A0A2N3N904	Uncharacterized protein.	Uncharacterized protein.	0.735
jhhlp_001988	jhhlp_001914	A0A2N3NCT7	A0A2N3NCI2	Uncharacterized protein.	Uncharacterized protein.	0.652
jhhlp_001988	jhhlp_003507	A0A2N3NCT7	A0A2N3N904	Uncharacterized protein.	Uncharacterized protein.	0.743
jhhlp_002212	jhhlp_000354	A0A2N3NDG0	A0A2N3NKP4	Vezatin domain-containing protein.	Uncharacterized protein.	0.936
jhhlp_002212	jhhlp_002328	A0A2N3NDG0	A0A2N3NDR8	Vezatin domain-containing protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.900