STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
jhhlp_004016PARP-type domain-containing protein. (329 aa)    
Predicted Functional Partners:
jhhlp_008717
Uncharacterized protein.
    
 0.667
jhhlp_002407
ERCC4 domain-containing protein.
    
 0.667
jhhlp_008637
DNA polymerase.
   
 0.650
jhhlp_007735
ANK_REP_REGION domain-containing protein.
    
  0.627
jhhlp_006564
WD_REPEATS_REGION domain-containing protein.
    
  0.616
jhhlp_007865
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
  0.611
jhhlp_004015
Uncharacterized protein; Belongs to the PI3/PI4-kinase family.
 
  
   0.606
jhhlp_002230
Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.
    
 0.606
jhhlp_005258
Small nuclear ribonucleoprotein G.
    
  0.590
jhhlp_004123
ERCC4 domain-containing protein.
    
 0.589
Your Current Organism:
Lomentospora prolificans
NCBI taxonomy Id: 41688
Other names: CBS 467.74, IMI 188615, L. prolificans, MUCL 18141, Scedosporium inflatum, Scedosporium prolificans
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.